Variant report

Variant	rs66610474
Chromosome Location	chr6:163792045-163792046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163788145..163792575-chr6:163834513..163836469,4	K562	blood:
2	chr6:163787459..163789359-chr6:163790484..163793224,2	K562	blood:
3	chr6:163790875..163792483-chr6:163795194..163796907,2	K562	blood:

Variant related genes	Relation type
ENSG00000270419	Chromatin interaction
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12175129	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737317	0.86[ASN][1000 genomes]
rs9347746	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9347747	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163789600-163792600	Enhancers	Brain Hippocampus Middle	brain
2	chr6:163790800-163792200	Enhancers	Lung	lung
3	chr6:163791000-163792800	Enhancers	Brain Cingulate Gyrus	brain
4	chr6:163791000-163792800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr6:163791000-163794200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:163791000-163794200	Weak transcription	Left Ventricle	heart
7	chr6:163791000-163813000	Weak transcription	Right Atrium	heart
8	chr6:163791200-163793800	Weak transcription	Spleen	Spleen
9	chr6:163791200-163794200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:163791400-163792400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:163791400-163792400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:163791400-163792800	Enhancers	Brain Angular Gyrus	brain
13	chr6:163791400-163792800	Enhancers	Brain Anterior Caudate	brain
14	chr6:163791600-163792600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:163791600-163792800	Enhancers	Brain Substantia Nigra	brain
16	chr6:163791600-163793800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:163791800-163792200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:163791800-163792400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:163791800-163792400	Enhancers	HSMMtube	muscle
20	chr6:163791800-163792600	Enhancers	Fetal Brain Female	brain
21	chr6:163791800-163792800	Enhancers	Fetal Brain Male	brain
22	chr6:163792000-163792200	Enhancers	Fetal Heart	heart
23	chr6:163792000-163792200	Enhancers	Right Ventricle	heart

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