Variant report
| Variant | rs66616859 |
|---|---|
| Chromosome Location | chr6:15126990-15126991 |
| allele | -/CT/TT |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:15125739..15127625-chr6:15128414..15130165,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs12524376 | 0.84[ASN][1000 genomes] |
| rs1739085 | 0.88[ASN][1000 genomes] |
| rs1739086 | 0.88[ASN][1000 genomes] |
| rs1739087 | 0.86[ASN][1000 genomes] |
| rs1770339 | 0.86[ASN][1000 genomes] |
| rs1770340 | 0.86[ASN][1000 genomes] |
| rs2474109 | 0.85[ASN][1000 genomes] |
| rs2474110 | 0.86[ASN][1000 genomes] |
| rs2474111 | 0.84[ASN][1000 genomes] |
| rs2474112 | 0.87[ASN][1000 genomes] |
| rs2486915 | 0.86[ASN][1000 genomes] |
| rs2486916 | 0.86[ASN][1000 genomes] |
| rs2486917 | 0.86[ASN][1000 genomes] |
| rs2747492 | 0.86[ASN][1000 genomes] |
| rs2747494 | 0.85[ASN][1000 genomes] |
| rs2791623 | 0.85[ASN][1000 genomes] |
| rs2791624 | 0.85[ASN][1000 genomes] |
| rs2791625 | 0.86[ASN][1000 genomes] |
| rs9476742 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830593 | chr6:15049636-15244190 | Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016007 | chr6:15099585-15159098 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv2762580 | chr6:15105917-15159110 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:15116400-15132000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
