Variant report

Variant	rs6661925
Chromosome Location	chr1:58751539-58751540
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11207189	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11207192	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11579843	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11589402	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12031219	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12737032	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12751731	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1619352	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1886305	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1924562	0.84[EUR][1000 genomes]
rs2406648	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs486262	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4912186	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4912316	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4912321	0.84[EUR][1000 genomes]
rs4912323	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs496009	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs592262	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs594016	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs597138	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs642295	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs654934	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6680413	0.84[EUR][1000 genomes]
rs6703393	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs689231	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs912503	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1008968	chr1:58582159-58982440	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv534974	chr1:58582159-58982440	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv1833343	chr1:58733050-58769757	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1838449	chr1:58733050-58769757	Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58724000-58759600	Weak transcription	Ovary	ovary

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