Variant report

Variant	rs6662562
Chromosome Location	chr1:158951138-158951139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11265127	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265128	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361567	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002401	chr1:158712627-158972031	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3376764	chr1:158761947-158998617	Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3369957	chr1:158915589-159003393	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158940600-158953000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr1:158941200-158952200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr1:158946200-158954200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:158948600-158952200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr1:158949000-158951200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:158949200-158953400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr1:158949200-158956400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr1:158949800-158959400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:158950000-158952800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:158950000-158953000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr1:158950800-158951400	Strong transcription	Primary T cells from cord blood	blood
12	chr1:158950800-158965600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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