Variant report

Variant	rs66628182
Chromosome Location	chr19:21824722-21824723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10153511	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10153514	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10401456	0.84[AFR][1000 genomes]
rs10404030	0.84[AFR][1000 genomes]
rs10405733	0.84[AFR][1000 genomes]
rs10418334	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10422946	0.83[AFR][1000 genomes]
rs11883213	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12232878	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12232880	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12232882	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12972465	0.83[AFR][1000 genomes]
rs12972876	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12972948	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12973438	0.84[AFR][1000 genomes]
rs12974037	0.84[AFR][1000 genomes]
rs12974463	0.80[AFR][1000 genomes]
rs12983182	0.84[AFR][1000 genomes]
rs12983603	0.87[AFR][1000 genomes]
rs12983724	0.84[AFR][1000 genomes]
rs12984244	0.84[AFR][1000 genomes]
rs12984552	0.84[AFR][1000 genomes]
rs12985310	0.86[AFR][1000 genomes]
rs1520074	0.84[AFR][1000 genomes]
rs2359408	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2359409	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2884700	0.80[AFR][1000 genomes]
rs2884702	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs34030908	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34063774	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34186261	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34191116	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs34296298	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs34391950	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs34414071	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs34465727	0.83[AFR][1000 genomes]
rs34489089	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34505911	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs34679728	0.80[AMR][1000 genomes]
rs34702084	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs34729710	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs34787886	0.82[AMR][1000 genomes]
rs34810593	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34943457	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35007061	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs35063624	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35079667	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35079912	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35134927	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35211334	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35221615	0.86[AFR][1000 genomes]
rs35257760	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35279419	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35397389	0.82[AFR][1000 genomes]
rs35586674	0.85[AMR][1000 genomes]
rs35733534	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35947380	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35970173	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36031236	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs36094732	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs36150731	0.80[AFR][1000 genomes]
rs36184440	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36186361	0.81[AFR][1000 genomes]
rs4808287	0.84[AFR][1000 genomes]
rs4808289	0.84[AFR][1000 genomes]
rs4809169	0.80[AFR][1000 genomes]
rs4809170	0.84[AFR][1000 genomes]
rs55804010	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62108442	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62108444	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62108456	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs62109860	0.86[AFR][1000 genomes]
rs62109861	0.86[AFR][1000 genomes]
rs6511279	0.84[AFR][1000 genomes]
rs6511280	0.84[AFR][1000 genomes]
rs6511281	0.84[AFR][1000 genomes]
rs66519141	0.84[AFR][1000 genomes]
rs66536336	0.83[AFR][1000 genomes]
rs66562280	0.83[AFR][1000 genomes]
rs66740503	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66760984	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66790650	0.85[AFR][1000 genomes]
rs66846030	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs66876878	0.84[AFR][1000 genomes]
rs66952332	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67042975	0.83[AFR][1000 genomes]
rs67057011	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67351081	0.86[AFR][1000 genomes]
rs67395636	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67487679	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs67488540	0.85[AMR][1000 genomes]
rs67542605	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs68026986	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs68089169	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68132044	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs68187621	0.85[AFR][1000 genomes]
rs71333835	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71333836	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71333837	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71333838	0.81[AFR][1000 genomes]
rs71333840	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs71333841	0.85[AFR][1000 genomes]
rs71333850	0.86[AFR][1000 genomes]
rs8103003	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8103014	0.83[AFR][1000 genomes]
rs8103174	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8103271	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8104224	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs8106449	0.84[AFR][1000 genomes]
rs9304989	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9676455	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9676469	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9676508	0.83[AMR][1000 genomes]
rs9807876	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv833782	chr19:21663537-21845722	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv911422	chr19:21752009-21973929	ZNF genes & repeats Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv3441368	chr19:21781459-22182822	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv3339694	chr19:21781479-22182792	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1063115	chr19:21782104-22528039	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
8	nsv911423	chr19:21783995-21858994	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv458525	chr19:21796943-22019697	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv578969	chr19:21796943-22019697	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	esv3392559	chr19:21798396-21965956	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	esv2760530	chr19:21798427-21885936	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv911424	chr19:21798441-22471156	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
14	nsv963135	chr19:21800743-21892052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv138061	chr19:21818959-21828721	Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv978790	chr19:21820675-21833812	Weak transcription Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
17	nsv833783	chr19:21821406-21991838	ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
18	esv3389304	chr19:21823012-21830610	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
19	esv11535	chr19:21824680-21833833	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21817200-21827200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:21817400-21827200	Weak transcription	Fetal Intestine Small	intestine
3	chr19:21818000-21840000	Weak transcription	Pancreas	Pancrea

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