Variant report

Variant	rs6663050
Chromosome Location	chr1:175037039-175037040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11579885	1.00[MEX][hapmap]
rs4322192	1.00[AMR][1000 genomes]
rs6683784	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011472	chr1:175013165-175042885	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1012861	chr1:175021780-175063160	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv535210	chr1:175021780-175063160	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv825487	chr1:175031609-175113572	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175036200-175037200	Enhancers	Fetal Muscle Trunk	muscle
2	chr1:175036200-175037200	Enhancers	Fetal Muscle Leg	muscle
3	chr1:175036400-175037200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr1:175036400-175037200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:175036400-175037600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:175036600-175037200	Enhancers	Fetal Stomach	stomach
7	chr1:175036800-175037200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:175036800-175037400	Active TSS	Adipose Nuclei	Adipose
9	chr1:175036800-175041000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:175037000-175037200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:175037000-175037200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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