Variant report

Variant	rs6663748
Chromosome Location	chr1:158015222-158015223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:158014548..158016120-chr1:158017209..158018949,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs74120539	1.00[AMR][1000 genomes]
rs74120540	1.00[AMR][1000 genomes]
rs74120541	1.00[AMR][1000 genomes]
rs74120542	1.00[AMR][1000 genomes]
rs74120543	1.00[AMR][1000 genomes]
rs7526797	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823720	chr1:157978556-158034017	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:157997600-158047600	Weak transcription	Dnd41	blood
2	chr1:158001200-158047400	Weak transcription	Thymus	Thymus
3	chr1:158002400-158025400	Weak transcription	Fetal Brain Female	brain
4	chr1:158008000-158019600	Weak transcription	Colonic Mucosa	Colon
5	chr1:158008200-158018400	Weak transcription	Spleen	Spleen
6	chr1:158008200-158023000	Weak transcription	A549	lung
7	chr1:158008200-158024600	Weak transcription	Placenta	Placenta
8	chr1:158009400-158024400	Weak transcription	Hela-S3	cervix
9	chr1:158009600-158022600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:158010000-158023000	Weak transcription	HSMM	muscle
11	chr1:158010200-158020600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:158011000-158015400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:158011000-158017200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:158012200-158019800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:158012400-158017200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr1:158012800-158015800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr1:158012800-158016800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:158012800-158017000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:158012800-158017200	Enhancers	Lung	lung
20	chr1:158013000-158016200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr1:158013000-158016400	Enhancers	Fetal Muscle Leg	muscle
22	chr1:158013000-158016600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:158013000-158016600	Enhancers	Right Atrium	heart
24	chr1:158013000-158017200	Enhancers	Ovary	ovary
25	chr1:158013000-158020600	Enhancers	Fetal Lung	lung
26	chr1:158013200-158017400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:158013400-158015800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:158013400-158017800	Enhancers	Adipose Nuclei	Adipose
29	chr1:158013400-158020600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:158013600-158015400	Weak transcription	Fetal Intestine Small	intestine
31	chr1:158013600-158020600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr1:158013600-158025600	Weak transcription	Brain Germinal Matrix	brain
33	chr1:158013800-158017000	Strong transcription	NHEK	skin
34	chr1:158013800-158027000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr1:158014000-158016800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:158014200-158018200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:158014200-158018800	Enhancers	Fetal Kidney	kidney
38	chr1:158014600-158016000	Enhancers	Osteobl	bone
39	chr1:158014600-158016200	Enhancers	Colon Smooth Muscle	Colon
40	chr1:158014600-158016200	Enhancers	NH-A	brain
41	chr1:158014600-158016600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr1:158014600-158016600	Enhancers	NHDF-Ad	bronchial
43	chr1:158014600-158016800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr1:158014600-158017600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr1:158014800-158015400	Weak transcription	Gastric	stomach
46	chr1:158014800-158015600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr1:158014800-158015800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr1:158014800-158016000	Enhancers	Pancreas	Pancrea
49	chr1:158014800-158016000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
50	chr1:158014800-158016000	Enhancers	HMEC	breast

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