Variant report

Variant	rs66639614
Chromosome Location	chr12:33442164-33442165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10844533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844535	0.88[AFR][1000 genomes]
rs10844536	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10844538	0.87[AFR][1000 genomes]
rs10844539	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10844540	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10844546	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10844547	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10844550	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10844551	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11052596	0.81[EUR][1000 genomes]
rs11052597	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11052599	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11052602	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11052608	0.84[EUR][1000 genomes]
rs11052615	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11052616	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11835630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12228222	0.90[AFR][1000 genomes]
rs1601141	0.83[AFR][1000 genomes]
rs16920825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1905404	0.88[AFR][1000 genomes]
rs2389190	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4275702	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4514512	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs58309791	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs60033917	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61929561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929563	0.88[AFR][1000 genomes]
rs61929596	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs66650337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67346975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7966285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7966412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7966816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7966959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1037459	chr12:33310703-33905662	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv541459	chr12:33310703-33905662	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv832368	chr12:33368962-33588498	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv826317	chr12:33380271-33446428	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1035988	chr12:33399053-33699363	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1047926	chr12:33427153-33493458	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33439200-33445600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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