Variant report

Variant	rs66640506
Chromosome Location	chr15:40291867-40291868
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40290539..40292857-chr15:40295870..40297927,2	MCF-7	breast:
2	chr15:40283947..40287472-chr15:40288447..40291993,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12050879	0.81[ASN][1000 genomes]
rs16970164	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2307102	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2307104	0.81[ASN][1000 genomes]
rs68131514	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40228200-40323800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:40236600-40303000	Weak transcription	Small Intestine	intestine
3	chr15:40249000-40304800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:40250000-40294800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr15:40250200-40299600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:40260800-40303400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:40262600-40293800	Weak transcription	Stomach Mucosa	stomach
8	chr15:40269000-40293200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:40269000-40293200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:40269600-40295600	Weak transcription	Fetal Heart	heart
11	chr15:40276400-40295600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr15:40277600-40294600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:40277600-40303600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:40277600-40303800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:40277600-40304400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:40277800-40293800	Strong transcription	Duodenum Mucosa	Duodenum
17	chr15:40277800-40294400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:40277800-40298200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:40277800-40303800	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:40277800-40304400	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr15:40277800-40304800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:40277800-40305000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr15:40277800-40305000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr15:40277800-40305400	Strong transcription	Fetal Muscle Leg	muscle
25	chr15:40277800-40305600	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr15:40278000-40294000	Strong transcription	Liver	Liver
27	chr15:40278000-40305400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr15:40278800-40294600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr15:40279800-40294400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:40282800-40299000	Weak transcription	K562	blood
31	chr15:40284200-40294800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:40284400-40294600	Weak transcription	Hela-S3	cervix
33	chr15:40285200-40295400	Weak transcription	Psoas Muscle	Psoas
34	chr15:40285600-40295200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr15:40285800-40293000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr15:40285800-40294800	Weak transcription	Primary B cells from peripheral blood	blood
37	chr15:40285800-40295400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr15:40286000-40292200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr15:40286000-40292800	Weak transcription	Brain Hippocampus Middle	brain
40	chr15:40286000-40293000	Weak transcription	Brain Anterior Caudate	brain
41	chr15:40286000-40293200	Weak transcription	Gastric	stomach
42	chr15:40286000-40294200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr15:40286000-40295000	Weak transcription	Colonic Mucosa	Colon
44	chr15:40286000-40295400	Weak transcription	Pancreas	Pancrea
45	chr15:40286200-40293200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr15:40286200-40293200	Weak transcription	Aorta	Aorta
47	chr15:40286200-40293200	Weak transcription	Thymus	Thymus
48	chr15:40286200-40298000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:40286400-40295400	Weak transcription	Fetal Brain Male	brain
50	chr15:40286600-40293200	Weak transcription	Brain Substantia Nigra	brain

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