Variant report

Variant	rs6664399
Chromosome Location	chr1:197339479-197339480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197335577..197340315-chr1:197341690..197345883,4	K562	blood:
2	chr1:197338322..197340480-chr1:197348000..197349900,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10801603	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126335	0.92[ASN][1000 genomes]
rs12134409	0.80[EUR][1000 genomes]
rs1337167	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1337168	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17554990	0.80[EUR][1000 genomes]
rs17618358	0.92[ASN][1000 genomes]
rs2476021	0.82[EUR][1000 genomes]
rs2494269	0.80[EUR][1000 genomes]
rs2759659	0.80[EUR][1000 genomes]
rs2759661	0.80[EUR][1000 genomes]
rs2786098	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2786100	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786101	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786103	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2786116	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2786117	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2786119	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2821101	0.80[EUR][1000 genomes]
rs2821107	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2821115	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2821116	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2821117	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2821125	0.82[AMR][1000 genomes]
rs2821132	0.82[EUR][1000 genomes]
rs3122635	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3122636	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4915231	0.91[ASN][1000 genomes]
rs4915525	0.92[ASN][1000 genomes]
rs4915526	0.92[ASN][1000 genomes]
rs6428397	0.92[ASN][1000 genomes]
rs7551088	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197324000-197347000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:197329800-197342400	Weak transcription	Brain Cingulate Gyrus	brain

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