Variant report

Variant	rs66645413
Chromosome Location	chr14:34988839-34988840
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:34988212..34991745-chr14:34992465..34994604,3	MCF-7	breast:
2	chr14:34987498..34989819-chr14:35007397..35008989,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129518	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12590563	0.91[ASN][1000 genomes]
rs12895007	0.91[ASN][1000 genomes]
rs34040871	0.86[ASN][1000 genomes]
rs34812984	0.85[ASN][1000 genomes]
rs35455487	0.87[ASN][1000 genomes]
rs35804665	0.94[ASN][1000 genomes]
rs35805982	0.81[EUR][1000 genomes]
rs4606621	0.88[ASN][1000 genomes]
rs4616204	0.89[ASN][1000 genomes]
rs55935721	0.91[ASN][1000 genomes]
rs60151606	0.90[ASN][1000 genomes]
rs7144343	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1051104	chr14:34592378-35007083	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv949738	chr14:34616331-34990688	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv564192	chr14:34725233-34996507	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv564193	chr14:34728127-35000188	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv528989	chr14:34744426-34998705	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1054949	chr14:34834260-34992049	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv542025	chr14:34834260-34992049	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv901600	chr14:34895977-35010041	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv1037857	chr14:34943388-35007724	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	nsv542026	chr14:34943388-35007724	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
12	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
13	nsv1049048	chr14:34969406-35048672	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
14	nsv1042294	chr14:34974774-35017859	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
15	nsv1053274	chr14:34980184-35020973	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	nsv1037503	chr14:34980184-35027115	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
17	nsv564194	chr14:34985645-35029396	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:34972200-34989800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:34975600-34989800	Weak transcription	Pancreas	Pancrea
3	chr14:34979600-34989600	Weak transcription	Psoas Muscle	Psoas
4	chr14:34980000-34990200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr14:34980600-34991200	Weak transcription	Fetal Kidney	kidney
6	chr14:34980600-34993800	Weak transcription	K562	blood
7	chr14:34981400-34992600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:34982000-34989600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr14:34982600-34991600	Weak transcription	HSMM	muscle
10	chr14:34983200-34991800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:34983200-34991800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:34983600-34989800	Weak transcription	Hela-S3	cervix
13	chr14:34983800-34990400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr14:34983800-34991600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr14:34984400-34989600	Strong transcription	Fetal Intestine Small	intestine
16	chr14:34984400-35006600	Strong transcription	Fetal Muscle Leg	muscle
17	chr14:34984600-35005800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr14:34984800-34989400	Strong transcription	Fetal Intestine Large	intestine
19	chr14:34984800-34998200	Strong transcription	Brain Germinal Matrix	brain
20	chr14:34984800-35002600	Strong transcription	Ovary	ovary
21	chr14:34984800-35003800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:34984800-35004400	Strong transcription	Adipose Nuclei	Adipose
23	chr14:34984800-35005800	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr14:34984800-35006600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr14:34984800-35006800	Strong transcription	Fetal Stomach	stomach
26	chr14:34985000-34989000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr14:34985000-34989800	Strong transcription	HepG2	liver
28	chr14:34985000-35003800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:34985000-35003800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:34985000-35004000	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr14:34985000-35004800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr14:34985000-35005400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr14:34985000-35005600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr14:34985000-35005800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr14:34985000-35005800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr14:34985000-35005800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr14:34985000-35006600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:34985000-35006800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr14:34985200-35003600	Strong transcription	Brain Cingulate Gyrus	brain
40	chr14:34985200-35005400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:34985200-35005600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr14:34985200-35005600	Strong transcription	Liver	Liver
43	chr14:34985200-35005800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr14:34985200-35006600	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr14:34985200-35007000	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr14:34985400-34989000	Strong transcription	Primary B cells from cord blood	blood
47	chr14:34985400-34997400	Strong transcription	Rectal Smooth Muscle	rectum
48	chr14:34985400-34998800	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr14:34985400-35002600	Strong transcription	Left Ventricle	heart
50	chr14:34985400-35003600	Strong transcription	Thymus	Thymus

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