Variant report

Variant	rs66645956
Chromosome Location	chr3:133144697-133144698
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1047649	0.89[EUR][1000 genomes]
rs2370245	0.89[EUR][1000 genomes]
rs28620611	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55635624	0.89[EUR][1000 genomes]
rs61008520	0.89[EUR][1000 genomes]
rs73211849	0.88[EUR][1000 genomes]
rs73211869	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877504	chr3:133122216-133172374	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv522281	chr3:133137434-133167363	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1007047	chr3:133137664-133181388	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1006289	chr3:133137664-133186808	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133142800-133145200	Weak transcription	Osteobl	bone
2	chr3:133142800-133147000	Weak transcription	Placenta	Placenta
3	chr3:133142800-133147200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:133142800-133147400	Weak transcription	Esophagus	oesophagus
5	chr3:133142800-133151800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:133142800-133154000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:133143000-133145200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:133143000-133145400	Weak transcription	HSMMtube	muscle
9	chr3:133143000-133145800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:133143400-133145600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:133143800-133144800	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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