Variant report

Variant	rs6665168
Chromosome Location	chr1:76874959-76874960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10218675	0.82[YRI][hapmap]
rs35868704	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1006776	chr1:76777323-76899975	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014231	chr1:76781140-76880630	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv462006	chr1:76826279-77042405	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv546585	chr1:76826279-77042405	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76872000-76875800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:76872000-76876400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:76872200-76875800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:76873800-76875000	Enhancers	Brain Cingulate Gyrus	brain
5	chr1:76873800-76875000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr1:76874400-76876200	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:76874600-76875000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:76874600-76875000	Enhancers	Brain Anterior Caudate	brain
9	chr1:76874800-76875000	Enhancers	Fetal Lung	lung
10	chr1:76874800-76875600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:76874800-76876200	Weak transcription	Brain Angular Gyrus	brain
12	chr1:76874800-76876200	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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