Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:165508580-165508931	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr1:165508571-165508931	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr1:165508598-165508903	HepG2	liver:	n/a	n/a
4	JUND	chr1:165508609-165508912	Hela-S3	cervix:	n/a	chr1:165508745-165508756
5	STAT3	chr1:165508621-165508915	MCF10A-Er-Src	breast:	n/a	n/a
6	FOSL2	chr1:165508552-165508988	A549	lung:	n/a	chr1:165508746-165508757
7	RFX5	chr1:165508644-165508873	Hela-S3	cervix:	n/a	n/a
8	FOXA1	chr1:165508591-165509006	HepG2	liver:	n/a	n/a
9	STAT3	chr1:165508686-165508877	MCF10A-Er-Src	breast:	n/a	n/a
10	CEBPB	chr1:165508591-165508932	Hela-S3	cervix:	n/a	n/a
11	NR2F2	chr1:165508495-165508906	MCF-7	breast:	n/a	n/a
12	FOXA1	chr1:165508533-165508886	HepG2	liver:	n/a	n/a
13	E2F4	chr1:165508660-165509026	MCF10A-Er-Src	breast:	n/a	n/a
14	JUN	chr1:165508689-165508889	HepG2	liver:	n/a	n/a
15	FOS	chr1:165508582-165508940	MCF10A-Er-Src	breast:	n/a	n/a
16	FOS	chr1:165508593-165508925	MCF10A-Er-Src	breast:	n/a	n/a
17	FOSL2	chr1:165508597-165508877	HepG2	liver:	n/a	chr1:165508746-165508757
18	ARID3A	chr1:165508617-165508909	HepG2	liver:	n/a	n/a
19	USF2	chr1:165508532-165508849	Hela-S3	cervix:	n/a	n/a
20	GATA3	chr1:165508474-165509047	MCF-7	breast:	n/a	n/a
21	JUND	chr1:165508659-165508858	H1-hESC	embryonic stem cell:	n/a	chr1:165508745-165508756
22	FOSL2	chr1:165508470-165508977	MCF-7	breast:	n/a	chr1:165508746-165508757
23	FOSL2	chr1:165508575-165508855	HepG2	liver:	n/a	chr1:165508746-165508757
24	JUND	chr1:165508579-165508863	HepG2	liver:	n/a	chr1:165508745-165508756

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RXRG-1	chr1:165508672-165508849	ENSG00000237463.1

Variant related genes	Relation type
LRRC52	TF binding region

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165503600-165509000	Weak transcription	Psoas Muscle	Psoas
2	chr1:165503600-165509000	Weak transcription	Right Atrium	heart
3	chr1:165505600-165513000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:165507200-165510400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:165507600-165509600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:165507600-165512800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:165508400-165509000	Enhancers	A549	lung
8	chr1:165508400-165509400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:165508400-165510800	Enhancers	Fetal Muscle Leg	muscle
10	chr1:165508400-165510800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr1:165508600-165509000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:165508600-165509800	Enhancers	Aorta	Aorta
13	chr1:165508600-165509800	Enhancers	Fetal Muscle Trunk	muscle
14	chr1:165508600-165510400	Enhancers	Placenta	Placenta
15	chr1:165508600-165510600	Enhancers	Left Ventricle	heart
16	chr1:165508800-165509000	Enhancers	Right Ventricle	heart
17	chr1:165508800-165509200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr1:165508800-165509600	Enhancers	Fetal Heart	heart

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