Variant report

Variant	rs6666948
Chromosome Location	chr1:212202682-212202683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212201500..212204262-chr1:212622636..212624940,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11119836	0.87[CEU][hapmap]
rs12070369	0.87[CEU][hapmap]
rs12076757	0.87[CEU][hapmap]
rs1387815	0.87[CEU][hapmap]
rs17699790	0.87[CEU][hapmap]
rs2788123	0.88[JPT][hapmap]
rs2970578	1.00[JPT][hapmap]
rs4951560	0.87[CEU][hapmap]
rs4951561	0.87[CEU][hapmap]
rs4951567	0.87[CEU][hapmap]
rs61828532	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61830761	0.83[AFR][1000 genomes]
rs7534064	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7534335	0.86[JPT][hapmap]
rs7540968	0.87[CEU][hapmap]
rs7547097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6666948	INTS7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212129400-212204000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:212133800-212208000	Weak transcription	Gastric	stomach
3	chr1:212134000-212207600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:212134000-212207800	Weak transcription	Colonic Mucosa	Colon
5	chr1:212136600-212204000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:212148800-212207600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr1:212153400-212203600	Weak transcription	Psoas Muscle	Psoas
8	chr1:212170800-212207800	Weak transcription	Right Ventricle	heart
9	chr1:212171200-212208000	Weak transcription	Esophagus	oesophagus
10	chr1:212171200-212208000	Weak transcription	Lung	lung
11	chr1:212171600-212207400	Weak transcription	Fetal Stomach	stomach
12	chr1:212171800-212207600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:212173000-212204200	Weak transcription	Fetal Heart	heart
14	chr1:212180400-212206800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:212180800-212204000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:212182200-212205000	Weak transcription	Thymus	Thymus
17	chr1:212188400-212204800	Weak transcription	Fetal Intestine Small	intestine
18	chr1:212188600-212203800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr1:212188600-212204200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:212188600-212206800	Weak transcription	Fetal Intestine Large	intestine
21	chr1:212190200-212203800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:212190200-212203800	Weak transcription	NHDF-Ad	bronchial
23	chr1:212190200-212207800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr1:212190400-212204200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr1:212190400-212204600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr1:212190400-212207800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr1:212191000-212204000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr1:212192200-212208000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:212194000-212204000	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr1:212194200-212207800	Weak transcription	Left Ventricle	heart
31	chr1:212194400-212207000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr1:212194400-212207600	Weak transcription	Fetal Thymus	thymus
33	chr1:212198200-212204800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr1:212198400-212203000	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr1:212198400-212203800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr1:212198400-212203800	Weak transcription	NHLF	lung
37	chr1:212198400-212204000	Weak transcription	Small Intestine	intestine
38	chr1:212198400-212204800	Weak transcription	Fetal Lung	lung
39	chr1:212198400-212206400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr1:212198400-212207600	Weak transcription	Fetal Kidney	kidney
41	chr1:212198600-212204000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr1:212198600-212204000	Weak transcription	K562	blood
43	chr1:212198600-212204400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr1:212198600-212204600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr1:212198600-212207200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr1:212198600-212207600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr1:212198800-212203800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr1:212198800-212204400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr1:212198800-212204400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr1:212198800-212207000	Weak transcription	Primary B cells from cord blood	blood

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