Variant report

Variant	rs6667088
Chromosome Location	chr1:165643119-165643120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165636460..165640030-chr1:165641604..165644830,4	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10800127	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918236	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7537071	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv946481	chr1:165639060-165646269	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165618200-165652400	Strong transcription	Fetal Muscle Leg	muscle
3	chr1:165619000-165643600	Strong transcription	Fetal Muscle Trunk	muscle
4	chr1:165619200-165648800	Strong transcription	Liver	Liver
5	chr1:165619600-165653200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:165623400-165653000	Weak transcription	Stomach Mucosa	stomach
7	chr1:165628000-165646600	Strong transcription	Primary T cells from cord blood	blood
8	chr1:165628800-165644000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:165628800-165646800	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:165628800-165646800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr1:165629000-165653600	Strong transcription	Dnd41	blood
12	chr1:165629200-165643600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:165629400-165652800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:165629400-165654200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr1:165629400-165656000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:165629600-165654800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr1:165629800-165643600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:165629800-165654800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:165630000-165654400	Strong transcription	Primary B cells from peripheral blood	blood
20	chr1:165631000-165643400	Strong transcription	Hela-S3	cervix
21	chr1:165632200-165645400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:165632400-165649400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr1:165633600-165651200	Weak transcription	Pancreas	Pancrea
24	chr1:165633600-165651400	Weak transcription	Gastric	stomach
25	chr1:165633800-165651000	Weak transcription	Small Intestine	intestine
26	chr1:165634400-165644600	Weak transcription	Fetal Brain Male	brain
27	chr1:165634400-165651800	Weak transcription	Fetal Heart	heart
28	chr1:165634600-165644800	Weak transcription	Brain Hippocampus Middle	brain
29	chr1:165635200-165647800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr1:165635800-165645600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr1:165635800-165648600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr1:165636000-165652400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr1:165636400-165643600	Strong transcription	Fetal Intestine Small	intestine
34	chr1:165637800-165645400	Weak transcription	Right Ventricle	heart
35	chr1:165637800-165645400	Weak transcription	Spleen	Spleen
36	chr1:165637800-165645400	Weak transcription	HSMMtube	muscle
37	chr1:165637800-165648600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr1:165637800-165649200	Weak transcription	Aorta	Aorta
39	chr1:165637800-165651200	Weak transcription	NHEK	skin
40	chr1:165637800-165653400	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr1:165638000-165645400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr1:165638000-165645400	Weak transcription	Lung	lung
43	chr1:165638000-165647800	Weak transcription	HMEC	breast
44	chr1:165638000-165666800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr1:165638200-165644600	Weak transcription	Brain Germinal Matrix	brain
46	chr1:165638200-165645400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr1:165638400-165645400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr1:165638400-165648000	Weak transcription	HepG2	liver
49	chr1:165638600-165644000	Weak transcription	Left Ventricle	heart
50	chr1:165638600-165644000	Weak transcription	HUVEC	blood vessel

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