Variant report

Variant	rs66682958
Chromosome Location	chr14:35227436-35227437
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CFL2-4	chr14:35227420-35227870	expReg_chr14_2111_-

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10147359	0.89[EUR][1000 genomes]
rs11625876	0.97[ASN][1000 genomes]
rs1200393	0.85[ASN][1000 genomes]
rs1200396	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1200398	0.83[ASN][1000 genomes]
rs1200399	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1200404	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1200405	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1200408	0.85[ASN][1000 genomes]
rs1200410	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1200411	0.94[EUR][1000 genomes]
rs1712367	0.89[EUR][1000 genomes]
rs1953430	0.91[ASN][1000 genomes]
rs1959155	0.91[ASN][1000 genomes]
rs1959158	0.91[ASN][1000 genomes]
rs1959159	0.89[ASN][1000 genomes]
rs2275145	0.91[ASN][1000 genomes]
rs2275146	0.91[ASN][1000 genomes]
rs2275148	0.80[ASN][1000 genomes]
rs2295467	0.89[EUR][1000 genomes]
rs2383680	0.86[EUR][1000 genomes]
rs2749983	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2891295	0.80[ASN][1000 genomes]
rs3783317	0.91[ASN][1000 genomes]
rs4387519	0.80[ASN][1000 genomes]
rs4982209	0.91[ASN][1000 genomes]
rs4982214	0.80[ASN][1000 genomes]
rs55805339	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55980174	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56742442	0.89[ASN][1000 genomes]
rs67323797	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7145412	0.91[ASN][1000 genomes]
rs7147682	0.80[ASN][1000 genomes]
rs7149749	0.80[ASN][1000 genomes]
rs7157311	0.83[ASN][1000 genomes]
rs7158753	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72678744	0.91[EUR][1000 genomes]
rs799675	0.89[EUR][1000 genomes]
rs8004518	0.91[ASN][1000 genomes]
rs8006073	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8019098	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv1040350	chr14:35196524-35245409	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1051540	chr14:35200858-35278635	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35211800-35227800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr14:35216600-35230600	Weak transcription	K562	blood
3	chr14:35218200-35232400	Weak transcription	Psoas Muscle	Psoas
4	chr14:35219200-35230600	Weak transcription	Fetal Kidney	kidney
5	chr14:35219400-35262000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr14:35219400-35267000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:35219600-35229400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr14:35219600-35254600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr14:35219800-35229200	Weak transcription	NHLF	lung
10	chr14:35219800-35229800	Weak transcription	Small Intestine	intestine
11	chr14:35219800-35231600	Weak transcription	Right Ventricle	heart
12	chr14:35220200-35231000	Weak transcription	Hela-S3	cervix
13	chr14:35220400-35232200	Weak transcription	HSMMtube	muscle
14	chr14:35220800-35229200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr14:35221000-35230400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:35221000-35234400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr14:35221000-35234600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:35221000-35253200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr14:35221000-35255800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:35221200-35229200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr14:35221200-35229400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr14:35221200-35229800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:35221200-35231000	Weak transcription	Colon Smooth Muscle	Colon
24	chr14:35221200-35233000	Weak transcription	Brain Anterior Caudate	brain
25	chr14:35221200-35262000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr14:35221400-35230600	Weak transcription	Fetal Brain Male	brain
27	chr14:35221400-35234400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr14:35221400-35234600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr14:35221400-35234600	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr14:35221400-35280800	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr14:35221600-35228400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr14:35221600-35234400	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr14:35221600-35235400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr14:35221600-35237400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr14:35221600-35237800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:35221600-35255400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr14:35221600-35258800	Strong transcription	Dnd41	blood
38	chr14:35221600-35274600	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr14:35222600-35236200	Strong transcription	Primary T cells from cord blood	blood
40	chr14:35222600-35237200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr14:35222800-35227800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr14:35222800-35229400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr14:35222800-35229400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr14:35222800-35229800	Weak transcription	Brain Hippocampus Middle	brain
45	chr14:35222800-35232200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr14:35223000-35229200	Weak transcription	Brain Germinal Matrix	brain
47	chr14:35223200-35233600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr14:35223400-35227800	Weak transcription	Osteobl	bone
49	chr14:35223400-35230400	Weak transcription	Fetal Heart	heart
50	chr14:35223800-35234400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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