Variant report

Variant	rs6669101
Chromosome Location	chr1:76801058-76801059
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12744209	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.94[TSI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34992360	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61771479	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7524886	0.87[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1006776	chr1:76777323-76899975	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014231	chr1:76781140-76880630	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76780200-76813800	Weak transcription	Primary B cells from cord blood	blood
2	chr1:76780600-76817200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:76783600-76802600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:76796800-76801800	Weak transcription	Brain Substantia Nigra	brain
5	chr1:76796800-76802400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:76797000-76802200	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:76797200-76801400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:76797200-76802200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:76797200-76802200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:76797200-76802200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:76797200-76802200	Weak transcription	Fetal Heart	heart
12	chr1:76797200-76802400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:76797200-76802600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:76797400-76801400	Weak transcription	Fetal Stomach	stomach
15	chr1:76797400-76802600	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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