Variant report

Variant	rs6669115
Chromosome Location	chr1:10275704-10275705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:10270579..10272996-chr1:10274200..10277824,5	K562	blood:
2	chr1:10270307..10271947-chr1:10273665..10276309,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054523	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11121540	0.86[AFR][1000 genomes]
rs11121558	0.86[AFR][1000 genomes]
rs12086725	1.00[AMR][1000 genomes]
rs12096283	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17034738	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10272200-10275800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:10272200-10276000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:10272200-10276000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr1:10272200-10276400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr1:10272200-10276400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:10272200-10276600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:10272200-10276600	Weak transcription	Spleen	Spleen
8	chr1:10272200-10277600	Weak transcription	Esophagus	oesophagus
9	chr1:10272200-10278000	Weak transcription	Colonic Mucosa	Colon
10	chr1:10272200-10278200	Weak transcription	Placenta	Placenta
11	chr1:10272400-10276200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr1:10272400-10276400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:10272600-10275800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr1:10272600-10275800	Weak transcription	A549	lung
15	chr1:10272600-10276000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr1:10272600-10276000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr1:10272600-10276200	Weak transcription	Stomach Mucosa	stomach
18	chr1:10272600-10277600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr1:10272600-10277800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr1:10272600-10277800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr1:10272600-10284000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr1:10272600-10284000	Weak transcription	Fetal Intestine Small	intestine
23	chr1:10272600-10368200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:10272800-10276600	Weak transcription	Lung	lung
25	chr1:10272800-10277600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr1:10272800-10284000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr1:10272800-10284400	Weak transcription	Gastric	stomach
28	chr1:10272800-10290000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:10272800-10296600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr1:10273200-10276200	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr1:10273600-10277800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr1:10273600-10278200	Weak transcription	Fetal Intestine Large	intestine
33	chr1:10273800-10276200	Enhancers	Brain Hippocampus Middle	brain
34	chr1:10273800-10276200	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr1:10273800-10276600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr1:10273800-10276600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr1:10274000-10275800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:10274000-10275800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr1:10274000-10275800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr1:10274000-10275800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr1:10274000-10276200	Weak transcription	K562	blood
42	chr1:10274000-10276400	Weak transcription	HSMMtube	muscle
43	chr1:10274000-10277800	Weak transcription	Fetal Kidney	kidney
44	chr1:10274000-10282400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr1:10274000-10285200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr1:10274200-10275800	Enhancers	Brain Angular Gyrus	brain
47	chr1:10274200-10275800	Weak transcription	HUVEC	blood vessel
48	chr1:10274200-10276200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr1:10274200-10276200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr1:10274200-10276200	Weak transcription	Adipose Nuclei	Adipose

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