Variant report

Variant	rs66693652
Chromosome Location	chr5:150970645-150970646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:150965412..150967281-chr5:150969711..150971989,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11746961	1.00[ASN][1000 genomes]
rs13159039	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5068	chr5:150968232-150979554	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150964400-150975000	Weak transcription	HSMMtube	muscle
2	chr5:150966000-151002000	Weak transcription	Right Atrium	heart
3	chr5:150966200-150972400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:150968000-150970800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:150968600-150971200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:150968600-150971200	Active TSS	Esophagus	oesophagus
7	chr5:150968800-150973800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:150969000-150971000	Active TSS	HMEC	breast
9	chr5:150969200-150971000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:150969200-150976200	Weak transcription	Spleen	Spleen
11	chr5:150969400-150979400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:150970000-150972000	Weak transcription	HSMM	muscle
13	chr5:150970200-150971000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:150970200-150971000	Active TSS	NHEK	skin
15	chr5:150970200-150972200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:150970400-150970800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:150970400-150970800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr5:150970400-150971000	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr5:150970400-150971000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:150970400-150971000	Enhancers	Fetal Intestine Small	intestine
21	chr5:150970400-150971200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr5:150970400-150971200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr5:150970400-150971200	Weak transcription	Fetal Kidney	kidney
24	chr5:150970400-150971400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr5:150970400-150971400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr5:150970400-150971400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr5:150970400-150973200	Enhancers	Fetal Intestine Large	intestine
28	chr5:150970600-150970800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
29	chr5:150970600-150970800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:150970600-150970800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr5:150970600-150970800	Weak transcription	Fetal Thymus	thymus
32	chr5:150970600-150971200	Enhancers	H1 Cell Line	embryonic stem cell
33	chr5:150970600-150971200	Enhancers	Adipose Nuclei	Adipose
34	chr5:150970600-150971200	Enhancers	Placenta Amnion	Placenta Amnion
35	chr5:150970600-150971400	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links