Variant report

Variant	rs6669591
Chromosome Location	chr1:102240286-102240287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11801608	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11808160	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11811884	1.00[YRI][hapmap]
rs17125434	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17125441	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58226675	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6663340	0.92[YRI][hapmap]
rs976375	1.00[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102240000-102242000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr1:102240200-102240600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:102240200-102240800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr1:102240200-102240800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:102240200-102241000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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