Variant report

Variant	rs66702753
Chromosome Location	chr9:103010947-103010948
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103005871..103007876-chr9:103009545..103011274,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12342188	0.83[ASN][1000 genomes]
rs12346672	0.84[AFR][1000 genomes]
rs55767211	0.87[AMR][1000 genomes]
rs61548089	0.87[AMR][1000 genomes]
rs875522	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102958800-103014400	Weak transcription	Hela-S3	cervix
2	chr9:102972400-103017200	Weak transcription	Spleen	Spleen
3	chr9:102972400-103035200	Weak transcription	Esophagus	oesophagus
4	chr9:102972600-103027200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:102972600-103046600	Weak transcription	Psoas Muscle	Psoas
6	chr9:102973000-103014600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr9:102973000-103027400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr9:102973000-103053800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:102974000-103014000	Weak transcription	Brain Substantia Nigra	brain
10	chr9:102974000-103014600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:102974000-103047600	Weak transcription	Fetal Brain Male	brain
12	chr9:102974200-103014600	Weak transcription	Brain Angular Gyrus	brain
13	chr9:102975800-103045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:102976800-103047800	Weak transcription	Fetal Heart	heart
15	chr9:102977000-103014600	Weak transcription	NH-A	brain
16	chr9:102978400-103013000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:102979400-103054600	Weak transcription	NHEK	skin
18	chr9:102984000-103014600	Weak transcription	HSMMtube	muscle
19	chr9:102985800-103014400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr9:102986600-103018800	Weak transcription	Small Intestine	intestine
21	chr9:102987400-103014600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr9:102987400-103045800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr9:102987400-103054600	Weak transcription	Gastric	stomach
24	chr9:102989400-103014600	Weak transcription	Brain Hippocampus Middle	brain
25	chr9:102989400-103047200	Weak transcription	GM12878-XiMat	blood
26	chr9:102989600-103011400	Weak transcription	Fetal Kidney	kidney
27	chr9:102989600-103014400	Weak transcription	Osteobl	bone
28	chr9:102989600-103027600	Weak transcription	A549	lung
29	chr9:102989800-103014600	Weak transcription	Placenta	Placenta
30	chr9:102990200-103014600	Weak transcription	Brain Anterior Caudate	brain
31	chr9:102991000-103016600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:102991400-103014400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr9:102992400-103014600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr9:102992400-103027200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr9:102992600-103039000	Weak transcription	NHDF-Ad	bronchial
36	chr9:102994800-103046600	Weak transcription	Pancreas	Pancrea
37	chr9:102995000-103014400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr9:102997800-103054400	Weak transcription	Colonic Mucosa	Colon
39	chr9:102999600-103014000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr9:102999600-103027400	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr9:102999800-103012600	Weak transcription	Primary T cells from cord blood	blood
42	chr9:102999800-103013200	Weak transcription	Fetal Brain Female	brain
43	chr9:102999800-103014600	Weak transcription	Thymus	Thymus
44	chr9:102999800-103020600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr9:102999800-103028000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:102999800-103035200	Weak transcription	Right Ventricle	heart
47	chr9:103000000-103014600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr9:103000000-103014600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr9:103000000-103021000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr9:103000000-103021000	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links