Variant report

Variant	rs6670379
Chromosome Location	chr1:45033263-45033264
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:45032494..45033476-chr1:45118184..45118814,2	K562	blood:
2	chr1:45026219..45030279-chr1:45030555..45033451,4	K562	blood:
3	chr1:45027973..45030279-chr1:45030555..45033321,2	K562	blood:
4	chr1:45031998..45033648-chr1:45056197..45059133,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10158231	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211015	0.91[ASN][1000 genomes]
rs11581742	0.84[EUR][1000 genomes]
rs11591203	0.93[EUR][1000 genomes]
rs11807223	0.94[ASN][1000 genomes]
rs12405833	0.83[EUR][1000 genomes]
rs12408210	0.83[EUR][1000 genomes]
rs12569316	0.95[ASN][1000 genomes]
rs156256	0.83[EUR][1000 genomes]
rs166589	0.82[EUR][1000 genomes]
rs16832091	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs172018	0.83[EUR][1000 genomes]
rs175222	0.83[EUR][1000 genomes]
rs270700	0.81[EUR][1000 genomes]
rs270715	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs270756	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270757	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270767	0.83[EUR][1000 genomes]
rs270768	0.87[EUR][1000 genomes]
rs2924869	0.83[EUR][1000 genomes]
rs34090807	0.87[ASN][1000 genomes]
rs3738734	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3850850	0.84[EUR][1000 genomes]
rs58875175	0.82[ASN][1000 genomes]
rs59485926	0.95[ASN][1000 genomes]
rs61260531	0.94[ASN][1000 genomes]
rs61351118	0.88[ASN][1000 genomes]
rs7525212	0.91[EUR][1000 genomes]
rs7553355	0.80[EUR][1000 genomes]
rs928685	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533037	chr1:44361728-45333408	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
2	nsv1004861	chr1:44843654-45210176	Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	346 gene(s)	inside rSNPs	diseases
3	nsv534940	chr1:44843654-45210176	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	346 gene(s)	inside rSNPs	diseases
4	nsv461395	chr1:44898998-45119965	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv546144	chr1:44898998-45119965	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv998476	chr1:45001278-45311757	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	426 gene(s)	inside rSNPs	diseases
7	nsv534941	chr1:45001278-45311757	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	426 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45018000-45082600	Weak transcription	Right Atrium	heart
2	chr1:45023000-45036200	Enhancers	Brain Substantia Nigra	brain
3	chr1:45023800-45047600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:45028200-45033600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:45029400-45038400	Enhancers	Brain Cingulate Gyrus	brain
6	chr1:45029800-45047800	Enhancers	Brain Hippocampus Middle	brain
7	chr1:45030400-45034600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr1:45030600-45034600	Enhancers	Brain Anterior Caudate	brain
9	chr1:45031200-45036400	Enhancers	Brain Angular Gyrus	brain
10	chr1:45031200-45040000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr1:45031600-45037000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:45031800-45034600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:45032200-45035200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:45032200-45036200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:45032200-45041000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr1:45032400-45042000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:45032800-45033400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:45033000-45034400	Enhancers	Placenta	Placenta
19	chr1:45033000-45037600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:45033200-45033400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:45033200-45033600	Bivalent Enhancer	NHEK	skin
22	chr1:45033200-45034400	Enhancers	HMEC	breast

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