Variant report

Variant	rs66708608
Chromosome Location	chr3:89486373-89486374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1028013	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1054750	0.81[EUR][1000 genomes]
rs1157607	0.81[EUR][1000 genomes]
rs1157608	0.81[EUR][1000 genomes]
rs12152372	0.82[EUR][1000 genomes]
rs12639506	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1512183	0.82[EUR][1000 genomes]
rs1512185	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17026944	0.81[EUR][1000 genomes]
rs1912965	0.81[EUR][1000 genomes]
rs1912966	0.82[EUR][1000 genomes]
rs2346836	0.84[EUR][1000 genomes]
rs2881488	0.82[EUR][1000 genomes]
rs59541469	0.82[EUR][1000 genomes]
rs60759140	0.82[EUR][1000 genomes]
rs6551412	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6795074	0.81[EUR][1000 genomes]
rs6800436	0.81[EUR][1000 genomes]
rs73137381	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73137382	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73137384	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73137387	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73137393	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73137395	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73139105	0.81[EUR][1000 genomes]
rs73139110	0.81[EUR][1000 genomes]
rs73139115	0.81[EUR][1000 genomes]
rs73139117	0.81[EUR][1000 genomes]
rs73139118	0.81[EUR][1000 genomes]
rs73139257	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73139261	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73139276	0.81[EUR][1000 genomes]
rs73139281	0.82[EUR][1000 genomes]
rs73139284	0.82[EUR][1000 genomes]
rs73139286	0.82[EUR][1000 genomes]
rs73139288	0.82[EUR][1000 genomes]
rs73139290	0.82[EUR][1000 genomes]
rs73139296	0.82[EUR][1000 genomes]
rs73139302	0.81[EUR][1000 genomes]
rs73141104	0.81[EUR][1000 genomes]
rs73141113	0.81[EUR][1000 genomes]
rs7616322	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7626735	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008018	chr3:89382031-90254063	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536639	chr3:89382031-90254063	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1010932	chr3:89424428-90192503	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1001926	chr3:89482918-89544929	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536640	chr3:89482918-89544929	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89460800-89521200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:89484200-89489400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:89484200-89491600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:89484600-89489600	Weak transcription	Fetal Brain Male	brain

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