Variant report

Variant	rs6671137
Chromosome Location	chr1:77819279-77819280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:77817387..77819700-chr1:77829412..77831526,2	K562	blood:
2	chr1:77813535..77817247-chr1:77819129..77821661,3	K562	blood:

Variant related genes	Relation type
ENSG00000233099	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1167199	0.82[AFR][1000 genomes]
rs1167203	1.00[AMR][1000 genomes]
rs1167204	1.00[AMR][1000 genomes]
rs1670615	0.82[AFR][1000 genomes]
rs1779175	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1003714	chr1:77756861-77949309	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77789000-77831200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:77795000-77836400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:77801000-77825800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:77803400-77839200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:77813600-77819800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:77813800-77819400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr1:77813800-77820600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr1:77813800-77820600	Weak transcription	NHLF	lung
9	chr1:77813800-77834200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:77814000-77820800	Weak transcription	HSMMtube	muscle
11	chr1:77814400-77835600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:77814600-77820400	Weak transcription	Osteobl	bone
13	chr1:77815000-77820200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:77816000-77824000	Weak transcription	Brain Anterior Caudate	brain
15	chr1:77816200-77819600	Weak transcription	Brain Angular Gyrus	brain
16	chr1:77816200-77825800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr1:77816400-77819400	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:77816400-77819400	Weak transcription	Brain Substantia Nigra	brain
19	chr1:77816400-77819600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr1:77816600-77819400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr1:77816800-77820400	Weak transcription	HSMM	muscle
22	chr1:77817200-77819800	Strong transcription	NHDF-Ad	bronchial
23	chr1:77817400-77834200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:77819200-77819400	Enhancers	Aorta	Aorta
25	chr1:77819200-77819800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:77819200-77820400	Enhancers	Primary T cells from cord blood	blood
27	chr1:77819200-77821400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links