Variant report

Variant	rs6671901
Chromosome Location	chr1:180510622-180510623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:180509296..180511935-chr1:180795313..180796906,2	K562	blood:
2	chr1:180505841..180513650-chr1:180514886..180521271,14	K562	blood:
3	chr1:180501651..180503663-chr1:180510175..180512721,2	K562	blood:
4	chr1:180470492..180472995-chr1:180509075..180511111,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266683	Chromatin interaction
ENSG00000135847	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1538620	1.00[CEU][hapmap]
rs4652507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180491600-180511200	Weak transcription	Psoas Muscle	Psoas
2	chr1:180497800-180511200	Weak transcription	Aorta	Aorta
3	chr1:180500000-180511200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:180506200-180513200	Weak transcription	Pancreas	Pancrea
5	chr1:180506400-180511200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:180506600-180511200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:180506800-180511400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:180507000-180514800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:180508000-180513200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:180508800-180511400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:180508800-180513000	Enhancers	Fetal Heart	heart
12	chr1:180509000-180511600	Enhancers	HMEC	breast
13	chr1:180509400-180511400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:180509400-180512800	Enhancers	Osteobl	bone
15	chr1:180509400-180513400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:180509600-180510800	Enhancers	NH-A	brain
17	chr1:180509600-180512200	Enhancers	HSMMtube	muscle
18	chr1:180510000-180512200	Enhancers	K562	blood
19	chr1:180510200-180511200	Weak transcription	Right Atrium	heart
20	chr1:180510200-180511200	Weak transcription	Right Ventricle	heart
21	chr1:180510200-180512200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr1:180510200-180512600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr1:180510200-180516000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr1:180510400-180510800	Enhancers	Brain Germinal Matrix	brain
25	chr1:180510400-180511200	Weak transcription	Ovary	ovary
26	chr1:180510400-180511200	Weak transcription	HSMM	muscle
27	chr1:180510400-180513000	Enhancers	Fetal Brain Male	brain
28	chr1:180510400-180529400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:180510600-180511000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:180510600-180511000	Weak transcription	Adipose Nuclei	Adipose
31	chr1:180510600-180511000	Weak transcription	Left Ventricle	heart

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