Variant report

Variant	rs667260
Chromosome Location	chr5:15534173-15534174
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11955129	1.00[AMR][1000 genomes]
rs304540	1.00[AMR][1000 genomes]
rs304553	1.00[AMR][1000 genomes]
rs304585	1.00[AMR][1000 genomes]
rs304588	1.00[AMR][1000 genomes]
rs524928	1.00[AMR][1000 genomes]
rs566631	1.00[AMR][1000 genomes]
rs590066	1.00[AMR][1000 genomes]
rs592200	1.00[AMR][1000 genomes]
rs599166	1.00[AMR][1000 genomes]
rs626130	1.00[AMR][1000 genomes]
rs641200	1.00[AMR][1000 genomes]
rs644859	1.00[AMR][1000 genomes]
rs6554879	1.00[AMR][1000 genomes]
rs6554881	1.00[AMR][1000 genomes]
rs670272	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs676820	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15502600-15535400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:15512200-15571200	Weak transcription	HUVEC	blood vessel
3	chr5:15518800-15547400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:15522000-15538600	Weak transcription	Adipose Nuclei	Adipose
5	chr5:15522800-15535200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:15522800-15535400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:15522800-15538000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr5:15523000-15537800	Weak transcription	Fetal Stomach	stomach
9	chr5:15523200-15535600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:15524000-15558600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:15525200-15534200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:15526800-15538800	Weak transcription	Psoas Muscle	Psoas
13	chr5:15527200-15538600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr5:15527400-15538600	Weak transcription	Brain Substantia Nigra	brain
15	chr5:15528000-15538400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:15531200-15537600	Weak transcription	Right Ventricle	heart
17	chr5:15532200-15537800	Weak transcription	Brain Anterior Caudate	brain
18	chr5:15532600-15534200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:15532600-15534200	Enhancers	Osteobl	bone
20	chr5:15532800-15534200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:15532800-15534200	Enhancers	HSMMtube	muscle
22	chr5:15532800-15534400	Enhancers	HSMM	muscle
23	chr5:15533000-15534200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:15533000-15534400	Enhancers	Fetal Heart	heart
25	chr5:15533200-15536000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr5:15533200-15537600	Weak transcription	Left Ventricle	heart
27	chr5:15533400-15536000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr5:15533400-15537600	Weak transcription	Ovary	ovary
29	chr5:15533600-15534400	Enhancers	NHDF-Ad	bronchial
30	chr5:15533800-15534400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr5:15533800-15534600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr5:15533800-15535200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr5:15533800-15535200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:15533800-15536000	Weak transcription	Fetal Muscle Leg	muscle
35	chr5:15533800-15543600	Weak transcription	Fetal Lung	lung
36	chr5:15533800-15547400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr5:15534000-15534400	Enhancers	Muscle Satellite Cultured Cells	--
38	chr5:15534000-15537000	Weak transcription	NHLF	lung
39	chr5:15534000-15543800	Weak transcription	Aorta	Aorta

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