Variant report

Variant	rs6673026
Chromosome Location	chr1:186132451-186132452
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11582026	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12123389	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2208692	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2383457	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56138834	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56267286	0.86[EUR][1000 genomes]
rs6425021	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7549613	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7552106	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7554865	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7554872	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs911743	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186046400-186135200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:186113800-186135800	Weak transcription	Ovary	ovary
3	chr1:186114600-186160800	Weak transcription	Fetal Kidney	kidney
4	chr1:186115400-186135400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:186116400-186135400	Weak transcription	Aorta	Aorta
6	chr1:186116600-186135400	Weak transcription	Lung	lung
7	chr1:186117200-186135800	Weak transcription	Fetal Lung	lung
8	chr1:186120000-186135200	Weak transcription	Liver	Liver
9	chr1:186122200-186135600	Weak transcription	K562	blood
10	chr1:186123800-186134000	Weak transcription	Adipose Nuclei	Adipose
11	chr1:186126200-186132800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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