Variant report

Variant	rs6674263
Chromosome Location	chr1:186936162-186936163
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10157406	0.92[EUR][1000 genomes]
rs10798077	0.92[EUR][1000 genomes]
rs10911978	0.92[EUR][1000 genomes]
rs12720672	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs12720673	0.88[AFR][1000 genomes]
rs12720686	0.81[AFR][1000 genomes]
rs1555202	1.00[GIH][hapmap]
rs1555205	0.92[EUR][1000 genomes]
rs2016991	0.92[EUR][1000 genomes]
rs2307198	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[EUR][1000 genomes]
rs2383557	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4650711	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4650712	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4650713	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4650714	0.92[EUR][1000 genomes]
rs6672835	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6683363	1.00[GIH][hapmap]
rs6690278	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[EUR][1000 genomes]
rs6696994	0.92[EUR][1000 genomes]
rs6700651	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs981581	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv548407	chr1:186875459-186951429	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186881800-186951200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr1:186895400-186937000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:186919000-186937000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:186919600-186944800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:186920400-186939000	Weak transcription	A549	lung
6	chr1:186923400-186958800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:186926800-186936800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:186926800-186951200	Weak transcription	Fetal Intestine Small	intestine
9	chr1:186927400-186943400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:186928000-186936400	Weak transcription	NH-A	brain
11	chr1:186930200-186943800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr1:186931200-186936400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:186931200-186936600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:186932400-186936800	Weak transcription	HMEC	breast
15	chr1:186932400-186937200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr1:186933200-186936600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr1:186933200-186936600	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr1:186933200-186939400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:186933600-186936200	Strong transcription	Hela-S3	cervix
20	chr1:186934000-186937000	Weak transcription	Colon Smooth Muscle	Colon
21	chr1:186935000-186950800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr1:186935200-186936600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:186935400-186936600	Enhancers	Fetal Intestine Large	intestine
24	chr1:186935600-186943400	Weak transcription	Adipose Nuclei	Adipose
25	chr1:186935800-186936200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:186935800-186937400	Enhancers	NHDF-Ad	bronchial
27	chr1:186935800-186947400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr1:186936000-186936800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:186936000-186943800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr1:186936000-186944800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr1:186936000-186949400	Weak transcription	Primary hematopoietic stem cells	blood

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