Variant report

Variant	rs6674792
Chromosome Location	chr1:217076197-217076198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11572438	1.00[CEU][hapmap]
rs11572520	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11572522	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12744303	1.00[EUR][1000 genomes]
rs17633169	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17658218	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs35498998	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71643425	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217062600-217078000	Weak transcription	Pancreas	Pancrea
2	chr1:217062800-217076200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:217062800-217087800	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:217072200-217082800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:217074200-217076400	Enhancers	HMEC	breast
6	chr1:217074400-217080000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:217074600-217076400	Weak transcription	Fetal Brain Male	brain
8	chr1:217074600-217078800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:217075200-217078800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:217075400-217076600	Enhancers	NHEK	skin
11	chr1:217075400-217077200	Enhancers	Brain Hippocampus Middle	brain
12	chr1:217075600-217077000	Enhancers	Fetal Intestine Small	intestine
13	chr1:217075800-217077200	Enhancers	Fetal Intestine Large	intestine
14	chr1:217075800-217077400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr1:217075800-217077400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:217075800-217077400	Enhancers	HSMM	muscle
17	chr1:217075800-217079000	Enhancers	HepG2	liver
18	chr1:217076000-217076200	Enhancers	Gastric	stomach
19	chr1:217076000-217076400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:217076000-217076400	Enhancers	Left Ventricle	heart
21	chr1:217076000-217076600	Enhancers	Brain Cingulate Gyrus	brain
22	chr1:217076000-217076600	Enhancers	Small Intestine	intestine
23	chr1:217076000-217076800	Enhancers	Brain Anterior Caudate	brain
24	chr1:217076000-217076800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr1:217076000-217076800	Enhancers	Brain Substantia Nigra	brain
26	chr1:217076000-217076800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr1:217076000-217077000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:217076000-217077000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr1:217076000-217077000	Enhancers	Duodenum Mucosa	Duodenum
30	chr1:217076000-217077000	Enhancers	Right Ventricle	heart
31	chr1:217076000-217077200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr1:217076000-217077200	Enhancers	Brain Angular Gyrus	brain
33	chr1:217076000-217077200	Enhancers	Stomach Smooth Muscle	stomach
34	chr1:217076000-217077200	Enhancers	HSMMtube	muscle
35	chr1:217076000-217077600	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr1:217076000-217078200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr1:217076000-217078200	Enhancers	NH-A	brain
38	chr1:217076000-217078400	Enhancers	Fetal Lung	lung
39	chr1:217076000-217078400	Enhancers	Stomach Mucosa	stomach
40	chr1:217076000-217078600	Enhancers	Right Atrium	heart
41	chr1:217076000-217079000	Enhancers	Fetal Heart	heart
42	chr1:217076000-217079000	Enhancers	Placenta Amnion	Placenta Amnion
43	chr1:217076000-217079400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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