Variant report

Variant	rs667533
Chromosome Location	chr6:119449124-119449125
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119448038..119450511-chr6:119670122..119672213,2	MCF-7	breast:
2	chr6:119448712..119451778-chr6:119457620..119460720,3	K562	blood:

Variant related genes	Relation type
ENSG00000111885	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12216301	0.92[EUR][1000 genomes]
rs6929791	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119441400-119449200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:119441400-119450200	Weak transcription	NH-A	brain
3	chr6:119441800-119450400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:119444800-119449600	Weak transcription	Fetal Lung	lung
5	chr6:119445800-119453400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:119446000-119450200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:119446200-119449400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:119446200-119449800	Weak transcription	HUVEC	blood vessel
9	chr6:119446200-119450200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:119446200-119450600	Weak transcription	NHEK	skin
11	chr6:119446400-119449200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:119448400-119449200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:119448400-119449200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:119448400-119452000	Enhancers	K562	blood
15	chr6:119448600-119450400	Weak transcription	HSMM	muscle
16	chr6:119448600-119450600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:119448600-119450600	Weak transcription	HSMMtube	muscle
18	chr6:119448600-119450800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:119448800-119450400	Enhancers	HepG2	liver
20	chr6:119448800-119450600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:119449000-119450400	Weak transcription	Stomach Mucosa	stomach
22	chr6:119449000-119454400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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