Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184335369..184336899-chr1:184344519..184346817,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10752935	0.88[ASN][1000 genomes]
rs10797960	0.87[ASN][1000 genomes]
rs10797961	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10797963	0.87[ASN][1000 genomes]
rs10911588	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10911591	0.91[EUR][1000 genomes]
rs10911593	0.87[ASN][1000 genomes]
rs12048492	0.88[ASN][1000 genomes]
rs16823097	0.87[ASN][1000 genomes]
rs3924652	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4233119	0.88[ASN][1000 genomes]
rs4382681	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4391631	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4397626	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4518858	0.88[ASN][1000 genomes]
rs4991701	0.82[ASN][1000 genomes]
rs61823500	0.87[ASN][1000 genomes]
rs61823501	0.81[ASN][1000 genomes]
rs6424948	0.88[ASN][1000 genomes]
rs6424949	0.88[ASN][1000 genomes]
rs6655949	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6670803	0.81[ASN][1000 genomes]
rs6683726	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7512260	0.88[ASN][1000 genomes]
rs7518756	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7542925	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7545368	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv3821	chr1:184319543-184365236	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184337400-184355000	Weak transcription	Psoas Muscle	Psoas
2	chr1:184346000-184355000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:184346200-184347800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:184346200-184348000	Weak transcription	NHDF-Ad	bronchial
5	chr1:184346200-184355000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:184346400-184351800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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