Variant report

Variant	rs6675433
Chromosome Location	chr1:71012281-71012282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12043275	0.85[EUR][1000 genomes]
rs12049613	0.80[EUR][1000 genomes]
rs3121982	0.81[EUR][1000 genomes]
rs71500609	0.81[EUR][1000 genomes]
rs7540783	0.81[EUR][1000 genomes]
rs7552319	0.81[EUR][1000 genomes]
rs9425031	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999219	chr1:70730556-71014911	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71011800-71013000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:71011800-71013000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:71011800-71013000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:71012000-71012400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:71012000-71013000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:71012000-71013000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:71012200-71013000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:71012200-71013000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr1:71012200-71013000	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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