Variant report

Variant	rs6676892
Chromosome Location	chr1:194017241-194017242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10801284	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1323090	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2119858	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2218284	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6664491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6664599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs693139	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7546706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv872835	chr1:194014041-194051568	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194010200-194020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:194014400-194020200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr1:194014400-194020800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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