Variant report

Variant	rs6677368
Chromosome Location	chr1:95166154-95166155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10782989	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10874875	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10874876	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10874877	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11165213	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12021681	0.80[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12025248	0.80[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12025489	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12040641	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12046216	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12048933	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1689173	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1689178	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6669784	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6685841	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs841326	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs841357	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv871001	chr1:95128546-95171891	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv871916	chr1:95143999-95189230	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1001043	chr1:95158042-95185906	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95142800-95167800	Weak transcription	Pancreas	Pancrea
2	chr1:95152800-95195000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr1:95153000-95173000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:95153400-95167600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:95155800-95173200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:95160200-95166400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:95160400-95167800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:95163200-95169000	Enhancers	NHDF-Ad	bronchial
9	chr1:95163600-95166200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:95163800-95167800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:95164000-95167600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:95164200-95168000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:95164400-95167000	Weak transcription	Stomach Mucosa	stomach
14	chr1:95164400-95167600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr1:95164400-95167600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr1:95164400-95167800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr1:95164400-95167800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:95164400-95168000	Weak transcription	HSMM	muscle
19	chr1:95164600-95167600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr1:95164600-95167800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr1:95164600-95167800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr1:95164600-95168600	Enhancers	HepG2	liver
23	chr1:95164800-95171000	Weak transcription	HSMMtube	muscle
24	chr1:95164800-95174000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:95165000-95167600	Weak transcription	Fetal Kidney	kidney
26	chr1:95165000-95167800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:95165000-95167800	Weak transcription	NHLF	lung
28	chr1:95165000-95171000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr1:95165000-95173200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr1:95165000-95175400	Weak transcription	NH-A	brain
31	chr1:95165200-95166600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr1:95165200-95166600	Weak transcription	Ovary	ovary
33	chr1:95165200-95167400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr1:95165200-95167600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr1:95165200-95167800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:95165200-95167800	Weak transcription	Placenta	Placenta
37	chr1:95165400-95167800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr1:95165600-95167000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr1:95165800-95167600	Weak transcription	Fetal Intestine Large	intestine
40	chr1:95166000-95166400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:95166000-95166800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:95166000-95167000	Strong transcription	Fetal Intestine Small	intestine
43	chr1:95166000-95167400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr1:95166000-95171400	Weak transcription	Right Atrium	heart

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