Variant report

Variant	rs6677650
Chromosome Location	chr1:102348126-102348127
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11164315	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11164318	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12059847	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12062147	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17125608	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17125611	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6684647	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7535330	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522156	chr1:102309649-102421714	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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