Variant report

Variant	rs6678615
Chromosome Location	chr1:85583293-85583294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10782540	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11161528	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11161529	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12041264	0.85[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12044946	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12407379	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12409882	0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17121721	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3816578	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6576750	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6657302	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs709779	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs709782	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs817465	0.83[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs817466	0.91[ASN][1000 genomes]
rs817468	0.92[ASN][1000 genomes]
rs817469	0.85[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs817472	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs817474	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs817482	0.85[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470724	chr1:85334788-85585260	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv462383	chr1:85334788-85594466	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv546700	chr1:85334788-85594466	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv947434	chr1:85334915-85594135	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
6	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85545400-85583400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:85565000-85586200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:85565000-85600600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:85579200-85587400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:85580400-85594000	Weak transcription	Aorta	Aorta
6	chr1:85581800-85597800	Weak transcription	Pancreas	Pancrea
7	chr1:85582000-85597400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:85582200-85583600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr1:85582800-85594000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:85583200-85593400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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