Variant report

Variant	rs6678766
Chromosome Location	chr1:241690554-241690555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT5A	chr1:241690332-241690868	K562	blood:	n/a	n/a
2	CEBPB	chr1:241690353-241690817	K562	blood:	n/a	n/a
3	MYC	chr1:241690355-241690907	K562	blood:	n/a	n/a
4	CCNT2	chr1:241690455-241690704	K562	blood:	n/a	n/a
5	UBTF	chr1:241690505-241690728	K562	blood:	n/a	n/a
6	MAX	chr1:241690529-241690729	K562	blood:	n/a	n/a
7	TAL1	chr1:241690091-241690955	K562	blood:	n/a	n/a
8	ARID3A	chr1:241690257-241691274	K562	blood:	n/a	n/a
9	GATA2	chr1:241690314-241690916	K562	blood:	n/a	chr1:241690400-241690409 chr1:241690400-241690407 chr1:241690400-241690407 chr1:241690400-241690407 chr1:241690399-241690409
10	POLR2A	chr1:241690511-241691351	SK-N-MC	brain:	n/a	n/a
11	EP300	chr1:241690462-241690861	K562	blood:	n/a	chr1:241690478-241690485
12	TEAD4	chr1:241690248-241690941	K562	blood:	n/a	n/a
13	IRF1	chr1:241690317-241691283	K562	blood:	n/a	chr1:241690468-241690478 chr1:241690464-241690478
14	POLR2A	chr1:241690325-241690688	K562	blood:	n/a	n/a
15	MAX	chr1:241690474-241690800	K562	blood:	n/a	n/a
16	STAT5A	chr1:241690351-241690832	K562	blood:	n/a	n/a
17	KAP1	chr1:241690523-241690970	K562	blood:	n/a	n/a
18	TBP	chr1:241690412-241690766	K562	blood:	n/a	n/a
19	MAFF	chr1:241690411-241690819	K562	blood:	n/a	n/a
20	CEBPD	chr1:241690341-241690890	K562	blood:	n/a	n/a
21	TBL1XR1	chr1:241689969-241690853	K562	blood:	n/a	n/a
22	MAFK	chr1:241690432-241691074	K562	blood:	n/a	chr1:241690632-241690641
23	ZNF384	chr1:241690474-241690977	K562	blood:	n/a	n/a
24	CBX3	chr1:241690310-241690989	K562	blood:	n/a	n/a
25	EP300	chr1:241690386-241691156	K562	blood:	n/a	chr1:241690478-241690485
26	RFX5	chr1:241690340-241691041	K562	blood:	n/a	n/a
27	BACH1	chr1:241690370-241690931	K562	blood:	n/a	n/a
28	CUX1	chr1:241690433-241690867	K562	blood:	n/a	n/a
29	TEAD4	chr1:241690304-241690937	K562	blood:	n/a	n/a
30	JUND	chr1:241690327-241690816	K562	blood:	n/a	n/a
31	CEBPD	chr1:241690315-241690941	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:241688644..241691145-chr1:241783609..241785817,2	MCF-7	breast:
2	chr1:241673338..241676303-chr1:241690156..241692248,2	K562	blood:
3	chr1:241683433..241685881-chr1:241689141..241691385,3	MCF-7	breast:

Variant related genes	Relation type
KMO	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10926507	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs12071124	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12120348	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1414493	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs2153694	0.91[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2992641	0.85[CEU][hapmap]
rs2992642	0.95[CEU][hapmap]
rs2994982	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2994985	0.91[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2994987	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2994989	0.91[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3014572	0.85[CEU][hapmap]
rs3014574	1.00[CEU][hapmap]
rs4310432	0.86[EUR][1000 genomes]
rs4659607	0.91[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4660100	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6679290	0.86[EUR][1000 genomes]
rs7530270	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918034	chr1:241072791-242005532	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv997966	chr1:241100739-242087629	Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	nsv949442	chr1:241432051-241730054	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1002214	chr1:241458939-242099790	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv549460	chr1:241494578-241833287	Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1009579	chr1:241499537-241824631	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv530112	chr1:241522031-241840269	Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv873368	chr1:241533392-242195928	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
9	nsv873371	chr1:241667244-241747838	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv873372	chr1:241690554-242438293	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:241689000-241690600	Enhancers	Liver	Liver
2	chr1:241690200-241690800	Flanking Active TSS	K562	blood

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