Variant report

Variant	rs6679449
Chromosome Location	chr1:152328411-152328412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10788835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs10888486	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs11204982	0.93[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs11204985	0.93[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs11204986	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11204987	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11803108	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12029431	0.81[JPT][hapmap]
rs12049036	0.85[JPT][hapmap]
rs12403031	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12408401	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12568784	0.93[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap]
rs1858485	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1923493	0.86[JPT][hapmap]
rs2065954	0.93[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap]
rs2146119	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2282303	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3120665	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3753443	0.86[JPT][hapmap]
rs3753444	0.86[JPT][hapmap]
rs3818831	0.93[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap]
rs3829868	0.85[JPT][hapmap]
rs4285700	0.86[JPT][hapmap]
rs4378206	0.93[CEU][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap]
rs7515448	0.93[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap]
rs7521839	0.86[JPT][hapmap];0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv3421046	chr1:152327880-152328583	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152317400-152331200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:152322800-152342600	Weak transcription	Ovary	ovary
3	chr1:152323600-152330800	Weak transcription	Right Ventricle	heart
4	chr1:152324800-152338800	Weak transcription	Fetal Kidney	kidney

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