Variant report

Variant	rs6679706
Chromosome Location	chr1:93223091-93223092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:93222826..93225248-chr1:93296209..93297825,2	MCF-7	breast:
2	chr1:93215411..93218590-chr1:93221864..93223911,3	MCF-7	breast:
3	chr1:93214790..93219134-chr1:93222182..93225825,4	K562	blood:
4	chr1:93222521..93225056-chr1:93227048..93229710,2	K562	blood:

Variant related genes	Relation type
ENSG00000122406	Chromatin interaction
ENSG00000234202	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7514859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527707	1.00[AMR][1000 genomes]
rs7539919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997898	chr1:93167128-93228156	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv871263	chr1:93196273-93248228	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93192400-93226400	Weak transcription	Esophagus	oesophagus
2	chr1:93193000-93223800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr1:93200200-93224000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr1:93209200-93227800	Weak transcription	Primary B cells from cord blood	blood
5	chr1:93211800-93249200	Weak transcription	Fetal Stomach	stomach
6	chr1:93214000-93224200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr1:93214000-93224600	Weak transcription	Psoas Muscle	Psoas
8	chr1:93214000-93231200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr1:93214000-93240000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:93214000-93248400	Weak transcription	Lung	lung
11	chr1:93218600-93223600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:93219400-93224800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:93219600-93224600	Weak transcription	Osteobl	bone
14	chr1:93219800-93225600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr1:93220000-93223800	Weak transcription	HMEC	breast
16	chr1:93220200-93227600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:93220400-93224200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr1:93220400-93225000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr1:93220400-93225800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:93220400-93232800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:93220800-93223200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr1:93221400-93223400	Enhancers	Right Ventricle	heart
23	chr1:93221400-93233800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:93221600-93223400	Enhancers	Right Atrium	heart
25	chr1:93221600-93224800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr1:93221800-93223400	Weak transcription	A549	lung
27	chr1:93221800-93224600	Weak transcription	Fetal Intestine Small	intestine
28	chr1:93222000-93224400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr1:93222000-93248000	Weak transcription	HSMMtube	muscle
30	chr1:93222400-93224200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:93222400-93224600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:93222400-93224800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:93222400-93230000	Weak transcription	NHEK	skin
34	chr1:93222400-93233800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:93222400-93234000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr1:93222400-93240600	Weak transcription	Left Ventricle	heart
37	chr1:93222400-93248200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr1:93222400-93248200	Weak transcription	Fetal Intestine Large	intestine
39	chr1:93222400-93248400	Weak transcription	Placenta	Placenta
40	chr1:93222600-93224400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:93222600-93231000	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr1:93222600-93232600	Weak transcription	Gastric	stomach
43	chr1:93222600-93246800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr1:93222800-93224800	Weak transcription	K562	blood
45	chr1:93222800-93227000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr1:93222800-93233800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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