Variant report

Variant	rs6680006
Chromosome Location	chr1:67065402-67065403
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67064848..67066944-chr1:67071232..67073081,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10889635	0.83[LWK][hapmap];0.82[YRI][hapmap]
rs56956053	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6687663	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72918417	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72918429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72918443	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72918451	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003016	chr1:67043120-67067119	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1013476	chr1:67044630-67065911	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1221	chr1:67047908-67092696	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67043600-67066600	Weak transcription	Fetal Brain Male	brain
2	chr1:67051200-67066200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:67052200-67070800	Weak transcription	Fetal Heart	heart
4	chr1:67055400-67073000	Weak transcription	Left Ventricle	heart
5	chr1:67057800-67073000	Weak transcription	Aorta	Aorta
6	chr1:67058000-67092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:67059200-67074400	Weak transcription	Fetal Lung	lung
8	chr1:67063200-67066400	Enhancers	NHDF-Ad	bronchial
9	chr1:67063400-67068800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:67063600-67065800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:67063800-67065800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:67064000-67065800	Enhancers	NH-A	brain
13	chr1:67064000-67066200	Enhancers	NHLF	lung
14	chr1:67064200-67065600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:67064200-67065600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:67064200-67065800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:67064200-67065800	Enhancers	HSMMtube	muscle
18	chr1:67064400-67065600	Enhancers	Brain Anterior Caudate	brain
19	chr1:67064400-67065600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr1:67064400-67065800	Enhancers	Fetal Muscle Leg	muscle
21	chr1:67064400-67066000	Enhancers	Brain Angular Gyrus	brain
22	chr1:67064400-67066000	Enhancers	Brain Hippocampus Middle	brain
23	chr1:67064400-67066400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:67064400-67074600	Weak transcription	Right Ventricle	heart
25	chr1:67064800-67065600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:67065000-67065600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:67065000-67066000	Enhancers	Brain Substantia Nigra	brain
28	chr1:67065000-67066200	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr1:67065000-67066600	Enhancers	Brain Cingulate Gyrus	brain
30	chr1:67065200-67065800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr1:67065400-67065800	Enhancers	Osteobl	bone

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