Variant report

Variant	rs668045
Chromosome Location	chr10:21320573-21320574
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11012381	1.00[JPT][hapmap]
rs12246854	1.00[ASN][1000 genomes]
rs16921213	1.00[CHD][hapmap]
rs1841530	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21311200-21322200	Weak transcription	Brain Anterior Caudate	brain
2	chr10:21319600-21320600	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr10:21319800-21323400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:21320000-21320800	Enhancers	Fetal Brain Male	brain
5	chr10:21320200-21320600	Enhancers	Fetal Lung	lung
6	chr10:21320200-21320600	Enhancers	Lung	lung
7	chr10:21320400-21320600	Enhancers	Brain Angular Gyrus	brain
8	chr10:21320400-21320600	Enhancers	K562	blood
9	chr10:21320400-21320800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:21320400-21325600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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