Variant report

Variant	rs66819851
Chromosome Location	chr4:103966802-103966803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103940582..103943595-chr4:103966268..103969642,3	K562	blood:

Variant related genes	Relation type
ENSG00000164037	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13133907	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152518	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4525980	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71597138	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72665008	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757946	chr4:103780705-104057321	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759270	chr4:103780705-104057321	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3429917	chr4:103915319-104207455	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv830021	chr4:103934454-104100588	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103941400-103967200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:103941400-103967800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:103941400-103968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:103941400-103968000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:103941400-103969000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:103941400-103969200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:103941400-103974000	Weak transcription	Esophagus	oesophagus
8	chr4:103941400-103975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:103941400-103989400	Weak transcription	NH-A	brain
10	chr4:103941400-103996600	Weak transcription	Lung	lung
11	chr4:103941600-103968000	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:103941600-103969200	Weak transcription	Adipose Nuclei	Adipose
13	chr4:103941600-103969200	Weak transcription	Fetal Thymus	thymus
14	chr4:103941600-103989000	Weak transcription	HMEC	breast
15	chr4:103941800-103969600	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:103941800-103994600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:103942000-103969600	Weak transcription	Primary T cells from cord blood	blood
18	chr4:103942000-103994400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:103942000-103995200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr4:103947600-103968000	Weak transcription	NHDF-Ad	bronchial
21	chr4:103947800-103996000	Weak transcription	Brain Angular Gyrus	brain
22	chr4:103948200-103969600	Weak transcription	Left Ventricle	heart
23	chr4:103948600-103970000	Weak transcription	Aorta	Aorta
24	chr4:103951400-103972400	Weak transcription	NHLF	lung
25	chr4:103952400-103994600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr4:103952800-103996600	Weak transcription	Fetal Stomach	stomach
27	chr4:103954000-103973600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr4:103954000-103996200	Weak transcription	Gastric	stomach
29	chr4:103955600-103968000	Weak transcription	Brain Anterior Caudate	brain
30	chr4:103956000-103970200	Weak transcription	HSMMtube	muscle
31	chr4:103957600-103969200	Weak transcription	Fetal Brain Male	brain
32	chr4:103957600-103995400	Weak transcription	Ovary	ovary
33	chr4:103958200-103968800	Weak transcription	Primary B cells from cord blood	blood
34	chr4:103959400-103969600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr4:103960600-103972000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:103960800-103991200	Weak transcription	Psoas Muscle	Psoas
37	chr4:103961600-103972800	Strong transcription	Dnd41	blood
38	chr4:103962400-103972000	Weak transcription	Osteobl	bone
39	chr4:103962800-103995000	Weak transcription	Small Intestine	intestine
40	chr4:103963000-103975200	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr4:103963600-103996600	Weak transcription	Pancreas	Pancrea
42	chr4:103963800-103969600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr4:103964000-103971400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:103964000-103971600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:103964200-103971400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr4:103964200-103971600	Strong transcription	Liver	Liver
47	chr4:103964200-103971800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:103964200-103972600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr4:103964400-103970800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr4:103964800-103967800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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