Variant report

Variant	rs6682369
Chromosome Location	chr1:217103658-217103659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10458465	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11590766	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12139054	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6682369	TMEM206	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217088800-217112000	Weak transcription	Pancreas	Pancrea
2	chr1:217093400-217104800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:217101200-217109600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:217102000-217107200	Weak transcription	Fetal Intestine Small	intestine
5	chr1:217102600-217104200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:217102600-217105200	Enhancers	HMEC	breast
7	chr1:217102600-217105200	Enhancers	NHEK	skin
8	chr1:217102800-217104600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:217102800-217104600	Enhancers	NH-A	brain
10	chr1:217102800-217105000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:217102800-217105000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:217103000-217103800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:217103200-217104000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr1:217103200-217104200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr1:217103600-217103800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr1:217103600-217104200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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