Variant report

Variant	rs6684226
Chromosome Location	chr1:193338028-193338029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10158488	0.87[AFR][1000 genomes]
rs1416978	1.00[AFR][1000 genomes]
rs2000033	1.00[AFR][1000 genomes]
rs2000034	1.00[AFR][1000 genomes]
rs28877141	0.87[AFR][1000 genomes]
rs6666665	1.00[AFR][1000 genomes]
rs6681616	1.00[AFR][1000 genomes]
rs6696831	1.00[AFR][1000 genomes]
rs7555784	0.80[AFR][1000 genomes]
rs9804124	0.96[AFR][1000 genomes]
rs9970143	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001174	chr1:193186758-193363372	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv997891	chr1:193271839-193566441	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1004003	chr1:193322299-193477254	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv535253	chr1:193322299-193477254	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3451387	chr1:193335344-193362618	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193326400-193353000	Weak transcription	Fetal Lung	lung
2	chr1:193332800-193338600	Weak transcription	Aorta	Aorta
3	chr1:193337000-193338200	Enhancers	Stomach Mucosa	stomach
4	chr1:193337400-193338200	Enhancers	HUVEC	blood vessel
5	chr1:193337600-193338600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:193337800-193338200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr1:193337800-193338200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:193337800-193338400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr1:193337800-193338400	Active TSS	GM12878-XiMat	blood
10	chr1:193337800-193338600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:193337800-193338600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr1:193337800-193338600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr1:193337800-193338600	Enhancers	Small Intestine	intestine
14	chr1:193338000-193338400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:193338000-193338400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr1:193338000-193338400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr1:193338000-193338400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links