Variant report

Variant	rs6684556
Chromosome Location	chr1:151297635-151297636
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151252184..151258894-chr1:151295105..151301119,15	MCF-7	breast:
2	chr1:151295651..151298119-chr1:151318938..151320798,2	MCF-7	breast:
3	chr1:151253853..151259248-chr1:151295350..151301325,11	K562	blood:
4	chr1:151297425..151301136-chr1:151370895..151373723,5	MCF-7	breast:
5	chr1:151297227..151300315-chr1:151316951..151319680,4	K562	blood:

Variant related genes	Relation type
ENSG00000143390	Chromatin interaction
ENSG00000237976	Chromatin interaction
ENSG00000232671	Chromatin interaction
ENSG00000159377	Chromatin interaction
ENSG00000143373	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2233842	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
3	esv2754960	chr1:151240542-151331304	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	esv34461	chr1:151240542-151411635	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
5	esv2753774	chr1:151240542-151411635	Genic enhancers Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
6	nsv831581	chr1:151289151-151478605	Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151258400-151297800	Strong transcription	Rectal Mucosa Donor 29	rectum
2	chr1:151260000-151298000	Strong transcription	Thymus	Thymus
3	chr1:151261600-151297800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:151262000-151298000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:151265800-151298000	Strong transcription	Fetal Thymus	thymus
6	chr1:151271400-151298800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:151273200-151298000	Strong transcription	Primary T cells from cord blood	blood
8	chr1:151273800-151297800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:151280200-151299200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:151280400-151299000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:151283200-151298000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:151283200-151299000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:151285600-151298000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:151286400-151297800	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr1:151286800-151298400	Strong transcription	Fetal Intestine Large	intestine
16	chr1:151287000-151298400	Weak transcription	Small Intestine	intestine
17	chr1:151287000-151298600	Strong transcription	Fetal Muscle Trunk	muscle
18	chr1:151287200-151297800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:151287200-151298000	Weak transcription	Fetal Heart	heart
20	chr1:151287400-151298000	Strong transcription	Duodenum Mucosa	Duodenum
21	chr1:151287400-151298000	Strong transcription	Fetal Stomach	stomach
22	chr1:151287800-151297800	Strong transcription	Osteobl	bone
23	chr1:151288200-151297800	Weak transcription	Fetal Kidney	kidney
24	chr1:151288400-151297800	Strong transcription	Fetal Muscle Leg	muscle
25	chr1:151288400-151298600	Weak transcription	Fetal Brain Male	brain
26	chr1:151288800-151298000	Weak transcription	Hela-S3	cervix
27	chr1:151288800-151298800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr1:151289000-151298200	Strong transcription	Placenta	Placenta
29	chr1:151289200-151297800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr1:151289200-151298800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr1:151292200-151297800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr1:151293000-151297800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:151293400-151297800	Strong transcription	NHEK	skin
34	chr1:151293600-151297800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr1:151293800-151297800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr1:151293800-151298000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:151294000-151298000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr1:151294600-151298000	Strong transcription	Fetal Intestine Small	intestine
39	chr1:151295200-151298800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr1:151295400-151297800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr1:151295400-151297800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr1:151295400-151297800	Weak transcription	Psoas Muscle	Psoas
43	chr1:151295600-151297800	Weak transcription	HUVEC	blood vessel
44	chr1:151295800-151298000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr1:151296000-151298800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
46	chr1:151296200-151297800	Strong transcription	Stomach Mucosa	stomach
47	chr1:151296200-151297800	Strong transcription	HSMM	muscle
48	chr1:151296200-151298000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr1:151296200-151298200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
50	chr1:151296200-151298200	Genic enhancers	Brain Hippocampus Middle	brain

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