Variant report

Variant rs6685342
Chromosome Location chr1:162321600-162321601
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:162298600-162324600 Weak transcription Fetal Brain Female brain
2 chr1:162300400-162325000 Weak transcription Aorta Aorta
3 chr1:162301400-162336400 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr1:162302400-162336800 Weak transcription Right Ventricle heart
5 chr1:162304000-162323400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr1:162304600-162322400 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr1:162305200-162325000 Weak transcription Brain Germinal Matrix brain
8 chr1:162305400-162325000 Weak transcription Brain Angular Gyrus brain
9 chr1:162305600-162325200 Weak transcription Brain Inferior Temporal Lobe brain
10 chr1:162311400-162336800 Strong transcription Breast Myoepithelial Primary Cells Breast
11 chr1:162312000-162336800 Weak transcription Left Ventricle heart
12 chr1:162312200-162325000 Weak transcription Fetal Stomach stomach
13 chr1:162313800-162323000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
14 chr1:162316600-162324600 Enhancers Fetal Intestine Large intestine
15 chr1:162317200-162336800 Weak transcription Colon Smooth Muscle Colon
16 chr1:162317600-162325000 Weak transcription Pancreas Pancrea
17 chr1:162318400-162323000 Weak transcription HepG2 liver
18 chr1:162318800-162324800 Enhancers Fetal Intestine Small intestine
19 chr1:162319200-162324400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr1:162319400-162324600 Enhancers Primary monocytes fromperipheralblood blood
21 chr1:162319400-162329800 Weak transcription Colonic Mucosa Colon
22 chr1:162319600-162324400 Enhancers Primary hematopoietic stem cells short term culture blood
23 chr1:162319800-162322000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr1:162319800-162325000 Weak transcription Brain Hippocampus Middle brain
25 chr1:162320000-162322200 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr1:162320000-162322400 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr1:162320200-162322400 Weak transcription ES-I3 Cell Line embryonic stem cell
28 chr1:162320200-162322400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
29 chr1:162320200-162323000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr1:162320200-162323200 Weak transcription HUES48 Cell Line embryonic stem cell
31 chr1:162320200-162323200 Weak transcription HUES64 Cell Line embryonic stem cell
32 chr1:162320400-162322800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:162320400-162323000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr1:162320400-162323400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
35 chr1:162320400-162323400 Weak transcription Gastric stomach
36 chr1:162320400-162323400 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr1:162320400-162323600 Enhancers Hela-S3 cervix
38 chr1:162320400-162324600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr1:162320400-162324600 Weak transcription Fetal Adrenal Gland Adrenal Gland
40 chr1:162320400-162324800 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr1:162320400-162325200 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr1:162320400-162328000 Weak transcription Right Atrium heart
43 chr1:162320400-162329000 Weak transcription Fetal Muscle Trunk muscle
44 chr1:162320400-162329800 Weak transcription Esophagus oesophagus
45 chr1:162320400-162329800 Weak transcription Stomach Mucosa stomach
46 chr1:162320400-162330800 Weak transcription HSMMtube muscle
47 chr1:162320400-162335800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr1:162320600-162321800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
49 chr1:162320800-162323800 Weak transcription HUVEC blood vessel
50 chr1:162321200-162321800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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