Variant report

Variant	rs6685809
Chromosome Location	chr1:58811167-58811168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12083015	1.00[AMR][1000 genomes]
rs2039733	1.00[AMR][1000 genomes]
rs6701441	1.00[AMR][1000 genomes]
rs7556433	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008968	chr1:58582159-58982440	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv534974	chr1:58582159-58982440	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1010188	chr1:58802487-58837012	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829948	chr1:58803681-58971380	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58810400-58811400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:58810400-58811800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:58810400-58812400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:58810600-58811200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr1:58810600-58811400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:58810600-58812600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr1:58810800-58811400	Enhancers	Liver	Liver
8	chr1:58810800-58811600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:58810800-58811800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:58810800-58811800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr1:58810800-58811800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr1:58810800-58812000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:58810800-58812200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr1:58810800-58812200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr1:58810800-58812400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:58810800-58812600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:58811000-58812200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr1:58811000-58812200	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links