Variant report

Variant	rs6686026
Chromosome Location	chr1:95088560-95088561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-F3-2	chr1:95088275-95089740	XLOC_000922

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10782985	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10874867	0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10874868	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4847318	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv947122	chr1:95081067-95089572	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv519997	chr1:95083836-95113417	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1001230	chr1:95085184-95108531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95083400-95088600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:95083800-95088600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:95084800-95090200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:95085000-95090200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:95085000-95090600	Enhancers	HMEC	breast
6	chr1:95085200-95089600	Enhancers	Fetal Intestine Small	intestine
7	chr1:95085200-95089800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:95085200-95090000	Enhancers	NH-A	brain
9	chr1:95085200-95090600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:95085200-95090600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr1:95085200-95090800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:95085400-95090000	Enhancers	Stomach Mucosa	stomach
13	chr1:95085800-95089200	Enhancers	Esophagus	oesophagus
14	chr1:95085800-95089800	Enhancers	Fetal Intestine Large	intestine
15	chr1:95086200-95088600	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr1:95086200-95088800	Enhancers	Fetal Heart	heart
17	chr1:95086200-95090600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:95086400-95089200	Enhancers	A549	lung
19	chr1:95086400-95090200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:95086600-95091200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr1:95086800-95089600	Enhancers	NHLF	lung
22	chr1:95086800-95090000	Enhancers	Placenta	Placenta
23	chr1:95087000-95088800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr1:95087000-95089800	Enhancers	HSMM	muscle
25	chr1:95087000-95089800	Enhancers	HSMMtube	muscle
26	chr1:95087000-95090200	Enhancers	NHEK	skin
27	chr1:95087200-95089000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:95087200-95089400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr1:95087200-95089400	Enhancers	Osteobl	bone
30	chr1:95087600-95089800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:95087600-95090000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:95087600-95090000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:95087800-95088600	Weak transcription	NHDF-Ad	bronchial
34	chr1:95087800-95089800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:95087800-95089800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:95087800-95091000	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr1:95088000-95088800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
38	chr1:95088000-95089000	Weak transcription	Fetal Kidney	kidney
39	chr1:95088000-95089600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:95088000-95090600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr1:95088000-95092000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr1:95088200-95089200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
43	chr1:95088200-95089600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:95088200-95090000	Enhancers	H9 Cell Line	embryonic stem cell
45	chr1:95088200-95090200	Enhancers	Fetal Stomach	stomach
46	chr1:95088200-95091000	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr1:95088200-95091200	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr1:95088200-95091600	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr1:95088400-95088600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
50	chr1:95088400-95088800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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