The 2.0 version of rSNPBase

Variant report

Variant rs6686665
Chromosome Location chr1:92056435-92056436
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92049600-92061600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
2 chr1:92051400-92056600 Weak transcription Primary T cells from cord blood blood
3 chr1:92051600-92056800 Weak transcription Left Ventricle heart
4 chr1:92051600-92058000 Weak transcription Right Ventricle heart
5 chr1:92051600-92060000 Weak transcription Lung lung
6 chr1:92051800-92056800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
7 chr1:92051800-92058200 Weak transcription Right Atrium heart
8 chr1:92051800-92067600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:92052200-92056600 Weak transcription Primary B cells from cord blood blood
10 chr1:92052200-92056800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:92052200-92057000 Weak transcription Stomach Smooth Muscle stomach
12 chr1:92054400-92057400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr1:92054600-92056800 Weak transcription Fetal Muscle Trunk muscle
14 chr1:92054600-92057200 Enhancers iPS-18 Cell Line embryonic stem cell
15 chr1:92054800-92056800 Enhancers K562 blood
16 chr1:92055000-92057000 Enhancers ES-I3 Cell Line embryonic stem cell
17 chr1:92055000-92057400 Enhancers HUES64 Cell Line embryonic stem cell
18 chr1:92055000-92060800 Enhancers Fetal Adrenal Gland Adrenal Gland
19 chr1:92055400-92061200 Enhancers Ovary ovary
20 chr1:92055600-92056800 Weak transcription HUES48 Cell Line embryonic stem cell
21 chr1:92055600-92056800 Weak transcription iPS-15b Cell Line embryonic stem cell
22 chr1:92055600-92056800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
23 chr1:92055600-92061400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr1:92055800-92057200 Enhancers Placenta Placenta
25 chr1:92055800-92076400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
26 chr1:92056000-92056800 Enhancers Primary T helper cells PMA-I stimulated --
27 chr1:92056000-92057000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr1:92056000-92057000 Enhancers Primary hematopoietic stem cells blood
29 chr1:92056000-92058400 Enhancers Fetal Thymus thymus
30 chr1:92056000-92062200 Enhancers Fetal Heart heart
31 chr1:92056200-92056600 Weak transcription Fetal Muscle Leg muscle
32 chr1:92056200-92056800 Enhancers HepG2 liver
33 chr1:92056200-92057000 Weak transcription H1 Cell Line embryonic stem cell
34 chr1:92056200-92057400 Enhancers iPS-20b Cell Line embryonic stem cell
35 chr1:92056400-92056600 Bivalent Enhancer Primary monocytes fromperipheralblood blood
36 chr1:92056400-92056600 Bivalent Enhancer Monocytes-CD14+_RO01746 blood
37 chr1:92056400-92056800 Enhancers Duodenum Smooth Muscle Duodenum
38 chr1:92056400-92057000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
39 chr1:92056400-92057200 Enhancers Primary T helper cells fromperipheralblood blood
40 chr1:92056400-92057200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr1:92056400-92057400 Enhancers Primary hematopoietic stem cells short term culture blood
42 chr1:92056400-92057400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr1:92056400-92057600 Flanking Active TSS Primary neutrophils fromperipheralblood blood
44 chr1:92056400-92057600 Enhancers Dnd41 blood
45 chr1:92056400-92058200 Enhancers Primary T helper 17 cells PMA-I stimulated --
46 chr1:92056400-92058600 Weak transcription Fetal Stomach stomach

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Last update: Aug 31, 2015